生物信息学资源库介绍.rar

课件大纲：

刘 吉 平
Reference： www.biosino.org
 生物信息学相关数据库资源
核酸及其相关数据库（序列数据库、基因组相关数据库、核酸三维结构数据库、其他）
蛋白质相关数据库（序列数据库、蛋白质三维结构数据库、蛋白质组数据库（二维凝胶电泳数据库）、信号传导及蛋白质-蛋白质相互作用相关数据库、DNA和蛋白质相互作用数据库）
基因或蛋白质一些特定数据库
糖类及其相关数据库
蛋白质翻译后修饰相关数据库
基因表达数据库
人类基因突变及疾病相关数据库
进化相关数据库及资源专利数据库
资源目录服务器或网页
核酸及其相关数据库
核酸序列数据库
 BIOSINO 我国的核酸序列公共数据库
EMBL - EMBL Nucleotide sequence database (EBI) *
GenBank - GenBank Nucleotide Sequence database (NCBI) *
DDBJ - DNA Data Bank of Japan *
dbEST - Database of Expressed Sequence Tags  (NCBI)
dbSTS - Database of Sequence Tagged Sites (NCBI)
2.基因组及相关数据库  Genomic Databases
GenomeWeb(HGMP) - A catalogue of useful Web sites for Genomics with a set of collections of genome databases 
GSDB - Genome Sequence database (NCGR)
GOLD - Genomes On-line db
一些数据库的直接链接
3.核酸三维结构数据库

NDB - Nucleic Acid Databank (3D structures)
BNASDB - Nucleic acid structure db from University of Pune
4.其他
AsDb - Aberrant Splicing db
ACUTS - Ancient conserved untranslated DNA sequences db
Codon Usage Db  - The frequency of codon use in each organism is made searchable through this World Wide Web site.
EPD - Eukaryotic Promoter db
HOVERGEN - Homologous Vertebrate Genes db
IMGT - ImMunoGeneTics db [Mirror at EBI]
ISIS - Intron Sequence and Information System
RDP - Ribosomal db Project
gRNAs db - Guide RNA db
PLACE - Plant cis-acting regulatory DNA elements db
其它
PlantCARE - Plant cis-acting regulatory DNA elements db
sRNA db - Small RNA db
ssu rRNA - Small ribosomal subunit db
lsu rRNA - Large ribosomal subunit db
5S rRNA - 5S ribosomal RNA db
tmRNA Website
tmRDB - tmRNA dB
tRNA - tRNA compilation from the University of Bayreuth
uRNADB - uRNA db
其他
RNA editing - RNA editing site
RNAmod db - RNA modification db
TelDB - Multimedia Telomere Resource
TRADAT - TRAnscription Databases and Analysis Tools
Subviral RNA db - Small circular RNAs db (viroid and viroid-like)
Transgenics

Cre Transgenic Database - Cre transgenic mouse lines
Transgenic/Targeted Mutation Database - Information on transgenic animals and targeted mutations
1.蛋白质序列和相关数据库
SWISS-PROT - SWISS-PROT annotated protein sequence db
PIR-international -The Protein Information Resource (protein sequence)
MIPS - Martinsried institute for protein sequence and homology data and yeast genome information
蛋白质及其相关数据库
PROSITE - PROSITE dictionary of protein sites and patterns
InterPro - Integrated Resources of Proteins Domains and Functional Sites
BLOCKS - BLOCKS db
DOMO - Protein domain db (Automatically generated)
Pfam - Protein families db (HMM derived) [Mirror at Sanger]
PRINTS - Protein Motif fingerprint db
ProDom - Protein domain db (Automatically generated)
PROTOMAP - An automatic hierarchical classification of SWISS-PROT proteins
SBASE - SBASE domain db (Protein domain sequence library)
SMART - Protein signalling and extracellular domain patterns (Simple Modular Architecture Research Tool)
ProClass - Protein sequence alignments and curation of protein families
.蛋白质三维结构和相关数据库

PDB - Protein Data Bank [Mirrors in EBI]
BioMagResBank - Repository for data on proteins, peptides, and nucleic acids from NMR spectroscopy
SWISS-MODEL Repository - Automatically generated protein models db
ModBase - Db of comparative protein structure models
CATH - UCL BSM structural classification of proteins
SCOP - Structural classification of proteins [Mirror at USA | Israel | Singapore | Australia]
Mol_R_Us - Molecules R Us, browser for PDB
BMM Domain Server - Biomolecular Modelling Laboratory (ICRF) protein domain server
PRESAGE - Collaborative resource for structural genomics
蛋白质三维结构和相关数据库
SBASE - SBASE domain db (Protein domain sequence library)
SMART - Protein signalling and extracellular domain patterns (Simple Modular Architecture Research Tool)
ProClass - Protein sequence alignments and curation of protein families
Kabat - Kabat db of protein of immunological interest
PMD - Protein Mutant db
蛋白质二维凝胶电泳数据库

WORLD-2DPAGE - A complete index of 2D-PAGE db and servers
Phoretix links - Phoretix page of links to 2D gel db
信号传导及蛋白质-蛋白质相互作用相关数据库
DIP - Db of Interacting Proteins
INTERACT - Protein-Protein interaction db
ProNet - Protein-Protein interaction db
　CANSITE - Signal Transduction's Web
SPAD - Signaling pathway db
CSNDB - Cell Signaling Networks db
DNA和蛋白质相互作用数据库 　
DPInteract - DNA-Proteins interactions db
特定基因或蛋白质的数据库
AAA - AAA family of ATPases server Acetylcholinesterases
ALDH - Aldehyde dehydrogenase gene superfamily db
Aminoacyl-tRNA synthetases in SWISS-PROT - List of aminoacyl-tRNA synthetases in SWISS-PROT
AARSDB - Aminoacyl-tRNA synthetases db
Allergens in SWISS-PROT - Nomenclature and index of allergens in SWISS-PROT
特定基因或蛋白质的数据库
AMSDb - Antimicrobial sequences db
Antibody resource page - Links to antibody related Web resources
Australian venom and toxin db
Bacillus thuringiensis toxin specificity db
TFII - Basal transcription factors
Blood group antigens in SWISS-PROT
BCGD - Breast cancer genes db from MBCR
BRENDA - Db of enzyme functional data
特定基因或蛋白质的数据库
EF-hand CaBP - EF-hand calcium-binding proteins db
CAZy - Carbohydrate-Active enZYmes Web site
CBS domain - Cystathionine Beta Synthase domain WWW page
CD antigens in SWISS-PROT - Nomenclature for surface proteins of human leucocytes (CD)
特定基因或蛋白质的数据库
CD antigens in PROW - Database on information about CD antigens
Chaperonin - Information on GroEL and GroES chaperonins
Conotoxins - Information on conotoxins from a Web site on cone shells。。 etc。。
糖类相关数据库
 CarbBank - Complex Carbohydrate Structure Database GlycoSuiteDB - Db of glycan structures
TGN - The Glycoscience Network
FCCA - Forum Carbohydrates Coming of Age
CARBHYD - Carbohydrate information WWW sites
Monosacharide browser - Space filling Fischer projection for monosaccharides 　

蛋白质翻译后修饰相关数据库
O-GlycBase - O-glycosylated proteins db
PhosphoBase - Phosphorylation sites db
RESID - Db of Amino Acid Modifications
　基因表达数据库
ASDB - Protein products and expression patterns of alternatively-spliced genes
Axeldb - Gene expression in Xenopus
BodyMap - Human and mouse gene expression data
EpoDB - Genes expressed in vertebrate RBC
FlyView - Drosophila development and genetics
Gene Expression Database (GXD) - Mouse gene expression and genomics
Kidney Development Database - Kidney development and gene expression
基因表达数据库
MAGEST - Ascidian (Halocynthia roretzi) gene expression patterns
Mouse Atlas and Gene Expression Database - Spatially-mapped gene expression data
PEDB - Normal and aberrant prostate gene expression
Tooth Development Database - Gene expression in dental tissue
TRIPLES - TRansposon-Insertion Phenotypes, Localization and Expression in Saccharomyces
人类基因突变及疾病相关数据库
HMGD - Human Gene Mutation db SVD - Sequence variation db
HGBASE - Human Genic Bi-Allelic Sequences db
The SNP consortium
dbSNP - Human single nucleotide polymorphism (SNP) db
List of mutation databases from OMIM List of mutation databases from IMT (Finland)
人类基因突变及疾病相关数据库　
ADB - Albinism db (Mutations in human genes causing albinism) Alpha-glucosidase - Information about human acid alpha-glucosidase (GSD-II)
AR mutations - Human androgen receptor mutation db
Antithrombin mutation db
Asthma and Allergy gene db
BIOMDB - Db of mutations causing tetrahydrobiopterin deficiencies
BLMbase - Human BLM mutation db (Bloom snydrom)
人类基因突变及疾病相关数据库
BTKbase - Human BTK mutation db (X-linked agammaglobulinemia)
CD40Lbase - Human CD40 ligand mutation db
COL1/3 mutation - Human Type I and III collagen mutation db
CFTR mutation - Human cystic fibrosis mutation db (CFTR)
EMD db - Human Emerin (EMD) mutation db (Emery-Dreifuss muscular dystrophy)
KMeyeDB - Eye disease genes db
人类基因突变及疾病相关数据库
FVII mutation - Human Factor VII mutation db
HAMSTeRS - Human Factor VIII mutation db (Haemophilia A)
HAeMB - Human Factor IX mutation db (Haemophilia B)
FBN1 mutation - Human fibrillin 1 mutation db (Marfan syndrome)
G6PD - Human G6PD deficiency resource
Galt mutation - Human galactose-1-phosphate uridylyltransferase mutation db (Galactosemia)
人类基因突变及疾病相关数据库
HEXAdb - Human Hexosaminidase A mutation db (Tay-sachs disease)
IL2RGbase - Human IL2RG (Interleukin-2 receptor gamma) mutation db (X-SCID)
L1CAM mutation - Human L1CAM mutation db
LDLR mutation - Human LDLR mutation db (Familial hypercholesterolemia)
LQTSdb - Long QT syndrome db
NCF1base - Human NCF1 mutation db
NCF2base - Human NCF2 mutation db
人类基因突变及疾病相关数据库
Neuromuscular diseases web site
NCL - Neuronal Ceroid Lipofuscinoses mutation db
OTCase - Human ornithine transcarbamylase (OTCase) website
Cytochrome P450 alleles nomenclature
p53 mutation db - University of Tokyo p53 mutation db
Germline p53 mutation db - University of Prague db of germline p53 mutations
PAHdb - Human phenylalanine hydroxylase (PAH) mutation db
人类基因突变及疾病相关数据库
PAX6 mutation - Human PAX6 mutation db
Prion - Prion and prion disease web site
RAG1base - Human RAG1 mutation db
RAG2base - Human RAG2 mutation db
RB1base - Human retinoblastoma-associated protein (RB) mutation db
RetNet - Retinal Information Network
Retina International Scientific Newsletter - Information on Retinal genes, proteins and diseases
人类基因突变及疾病相关数据库
TSC - TSC (TSC1/TSC2) variation db
TSC2 - Cardiff-Rotterdam Tuberous Sclerosis (TS) db (Tuberin; TSC2)
TGDB - Tumor gene db
VMD2 mutation - Human VMD2 mutation db
vWF mutation - Human von Willebrand factor (vWF) mutation db
WRN - Human WRN mutation db (Warner disease)
WT1 mutation - Human WT1 mutation db
X-ALD mutation - Human ABCD1 mutation db 
进化相关数据库及资源
Clusters of Orthologous Groups (COG) - Phylogenetic classification of proteins from 21 complete genomes
XREFdb - Cross-referencing of model organism genetics with mammalian phenotypes 
TreeBASE - Relational db of phylogenetic information
The Tree of life - Collection of WWW pages on phylogeny and biodiversity of organisms
　专利数据库
DPD - DNA Patent db
Ag Patents - Agricultural Biotechnology patents from the USDA
USPTO patent db - USA Patent and Trademark Office patent db
Esp@cenet - Patent information database from the European Patent Office (worldwide coverage)
The Delphion Intellectual Property Network (IPN)  for searching, viewing, and analyzing patent documents.
　资源目录服务器或网页
BioCatalog - The BioCatalog at EBI
Yellow BAGI - Bio Access Guide to the Internet at Houston University
Software library from Genamics.com
DBCAT - Databases catalog at INFOBIOGEN
MBDL - Molecular Biology Database List
　Amos' WWW links page 
Nucleic Acids Research database issue
Human
CEPH-genotype database
CEPH home page - a research laboratory which constructs maps of the human genome
GeneMap'99 - A Gene Map of the Human Genome (NCBI)
OMIM - Online Mendelian Inheritance in Man
GENATLAS - Human genes atlas
GeneClinics - Medical genetics knowledge base
GDB - Human genes and genomic maps
GeneCards - Db integrating information on human genes
Human
UDB - Unified db for Human genome mapping
Ensembl - Human genome annotations site
UCSC human genome working draft
TIGR HGI - TIGR Human Gene Index
Human BAC Ends Database - Non-redundant human BAC end sequences
Hs UniGene - Human transcripts in GenBank (EST clusters)
STACK - Sequence Tag Alignment and Consensus Knowledgebase (Db of consensus human ESTs)
Human
Allgenes.org - Human predicted gene index/catalog
GenLink - Human genetics resource
GENOTK - Human cDNA db
HUGE - Human Unidentified Gene-Encoded large proteins cDNA (KIAA...)
CGAP - Cancer Genome Anatomy Project
SCDb - Stem cell db
Human
HuGeMap - Human genome genetic and physical map data
G3-RH - Stanford G3 and TNG radiation hybrid maps
GB4-RH - Genebridge4 (GB4) human radiation hybrid maps
Radiation Hybrid Database - Radiation hybrid map data
　 Human chromosome 1~8
Chr1 - Human chromosome 1 at Rockefeller University [Mirror at EBI]
Chr3 - Human chromosome 3 db at the University of Texas Health Science Center
Chr7 - Human chromosome 7 db at Ontario's Hospital for Sick Children
Chr8 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 8
Human chromosome9~11
Chr9 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 9
Chr9 - Human chromosome 9 db
Chr10 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 10
GTC Chr10 data - Human chromosome 10 data from Genome Therapeutics Corporation
Chr11 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 11
11DB - Human chromosome 11 db at Imperial College (U.K.)
Human chromosome12~16
Chr12 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 12
Chr13 - Human chromosome 13 db at Columbia
Chr14 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 14
Chr15 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 15
Chr15 UBC - Human chromosome 15 WWW page at UBC
Chr16 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 16
Human chromosome16~19
Chr16 LANL - Human chromosome 16 db at Los Alamos National Laboratory
Chr16 TIGR - Human chromosome 16 db at TIGR
Chr17 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 17
Chr18 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 18
Chr18 - Human chromosome 18 at Boston Children's Hospital
Chr19 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 19
Human chromosome20~22
Chr20 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 20
Chr21 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 21
Chr21 at RIKEN - Human chromosome 21 genome site at RIKEN (Japan)
Chr21 at ERI - Human chromosome 21 genomic sequence db from the Eleanor Roosevelt Institute
Chr22 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 22
Chr22 at Sanger - Sanger Center chromosome 22 project
Chr22 at HGC - Human genome center for chromosome 22
Human chromosomeX~Y
ChrX SWISS-PROT list - Links to SWISS-PROT entries from human chromosome X
IXDB - Integrated X chromosome db
ChrY SWISS-PROT list - Links to SWISS-PROT entries from human chromosome Y
　
DRESH - Human cDNA clones homologous to Drosophila mutant genes
Vertebrates 
OMIA - Online Mendelian Inheritance in Animals
MGI - Mouse Genome Informatics (includes Mouse Genome Database (MGD))[Mirrors in Australia | UK | Japan]
TIGR MGI - TIGR Mouse Gene Index
Mm UniGene - Mouse transcripts in GenBank (EST clusters)
RatMAP - Rat genome db
TIGR RGI - TIGR Rat Gene Index
Rn Unigene - Rat transcripts in GenBank (EST clusters)
Vertebrates 　
BovBASE - Bovine genome db (in UK)
BOVMAP - Bovine genome db (in France)
Ark-Cat - Cat genome db
HorseBASE - Horse genome db
DGP - Dog Genome Project
PiGBASE - Pig genome db
SheepBASE - Sheep genome db (also known as SheepMap) [Mirror in UK]
MIS - Mendelian Inheritance in Sheep 　
ChickGBASE - Chicken genome db 　
Vertebrates
Fugu - HGMP Resource Centre Fugu Project (Fugu rubripes)
Medakafish - Mekada fish (Oryzias latipes) server
Ark-Tilapia - Tilapia mossambica genome db
The fish net - Zebrafish server
FishBase - Global information system on fishes
Mitochondrion and chloroplast
GOBASE - Organelle Genome Database
MitoDat - Mendelian Inheritance and the Mitochondrion db (mitochondrial nuclear genes)
MITOMAP - Human mitochondrial genome db
MmtDB - Metazoa mitochondrial DNA variants db
MitBASE - Integrated mitochondrial DNA db
MitBASE-Pilot - Db of S.cerevisiae nuclear genes involved in mitochondrial biogenesis
HvrBase - Primates mtDNA control region sequences compilation
Mitochondrion and chloroplast
MOUSE - Mitochondrial and Other Useful SEquences (human and apes mit. DNA db)
MITOP - Mitochondrial proteins, genes and diseases
AMmtDB - Metazoan mitochondrial DNA sequences 　
Insects
Drosophila SWISS-PROT list - Links to Drosophila SWISS-PROT entries
FlyBase - Drosophila genetic and molecular db [Mirror at EBI]
FlyView - Drosophila image db
GIFTS - Gene Interactions in the Fly Trans-World Server
FlyNets - Db of molecular interactions in Drosophila melanogaster
SOS-DGBD - Db of Drosophila DNA sequences annotated with regulatory binding sites
Mosquito Genomics
Invertebrates
WormBase - C.elegans db [Mirror at Sanger]
C.elegans WWW server - at University of Texas Southwestern
ACeDb - Caenorhabditis elegans db
C.elegans Mitochondrial Directory - Data on C.elegans genes for mitochondrial proteins
C.elegans EST - C.elegans EST db from Japan (Yuji Kohara's group)
C.elegans SWISS-PROT list - Links to C.elegans SWISS-PROT entries
WormPep - C.elegans proteins db
WormPD - C.elegans protein db 　
Invertebrates
Dictystelium Genome Sequencing project at BCM
Dictyostelium discoideum genome project at IENA
DictyDb - Dictyostelium discoideum db
Dicty_cDB - Dictyostelium discoideum cDNA project 　
Cone shells Web site 　
Parasite genomes db and resources
Parasite genomes WWW site 　
PlasmoDB - P.falciparum genome db
Invertebrates
Malaria - WHO - Malaria db (from WHO)
P.falciparum Sanger - P.falciparum genome project at Sanger
PFDB - Plasmodium falciparum Genome db
P.falciparum - Plasmodium falciparum Gene Sequence Tag project
Invertebrates
MAD - Malaria Antigen db
Malaria parasite metabolic pathways 　
LGN - Leishmania Genome Network
Trypanosoma brucei genome project
Trypanosoma cruzi genome project
kDNA - Kinetoplast Minicircle Sequence db
Plants
NAL - AGIS - Access to many plant genome databases at the National Agricultural Library
Demeter's genomes - Access to many plant genome databases at the USDA-ARS
Mendel - Plant gene nomenclature database from CPGN
AtDB - Arabidopsis thaliana genome database
TAIR - The Arabidopsis Information Resource
MATDB - MIPS Arabidopsis thaliana db
TIGR AtGI - TIGR Arabidopsis thaliana Gene Index
AGR - Arabidopsis Genome Resource 
Plants
BeanGenes - Beans genome db
BeanRef - Beans genome db and other resources
ChlamyDB - Chlamydomonas reinhardtii genome db
CropNet - Genome mapping in crop plants
CottonDB - Cotton genome db
MaizeDb - Maize genome db
INRA Maize - INRA Maize genome db
ZmDB - Maize genome database
Pisum sativum (pea) web site
Plants-Rice
RGP - Rice Genome Research Program
RiceGenes
Rice-research.org - Monsanto rice genome site
TIGR OsGI - TIGR Rice Gene Index
TIGR GmGI - TIGR Soybean Gene Index
Snapdragon (A.majus) web site
SorghumDB - Sorghum genome db
SoyBase - Soybean genome db
Plants
SoyBase metabolic db - Metabolic subset of the soybean genome db
TIGR LeGI - TIGR Tomato Gene Index
Dendrome - Forest trees genome db
Fungi
FGSC - Fungal Genetics Stock Center
FGR - Fungal Genome Resource 　
Yeast SWISS-PROT list - Links to S.cerevisiae WWW sites and to SWISS-PROT entries
SGD - Saccharomyces genome db
YPD - Yeast protein db
MitBASE-Pilot - Db of S.cerevisiae nuclear genes involved in mitochondrial biogenesis
Yeast snoRNA - Yeast small nucleolar RNAs db
YTPdb - Yeast Transport Protein db
PathCalling - Yeast protein-protein interaction db
Fungi 　
Aspergillus web site
C.albicans SWISS-PROT list - Links to C.albicans WWW sites and to SWISS-PROT entries
Candida albicans - Candida albicans server at the Univ. of Minnesota
NGP - Neurospora crassa genome project
PC - Pneumocystis carinii genome project
S.pombe SWISS-PROT list - Links to S.pombe WWW sites and to SWISS-PROT entries
S.pombe NIH - Fission yeast (S.pombe) server at the NIH
Fungi
Phycomyces Web site - Resource site for scientists working on Phycomyces
　
EMGlib - Completely sequenced bacterial genomes and the yeast genome
Bacteria
ICB - Identification and Classification of Bacteria
WDCM - World Data Center for Microorganisms
List of Bacterial Names with Standing in Nomenclature
MDB - TIGR Microbial db
< A>- Genome information broker for Microbial genomes
HOBACGEN - Homologous Bacterial Genes db
Comparison of the transport capabilities of bacterial genomes - from Ian Paulsen
BPGD - Bacterial polysaccharide gene db
Bacteria
Bacterial quorum sensing
MicrobeWorld - Educational site on microbes 　
E.coli SWISS-PROT list - Links to E.coli WWW sites and to SWISS-PROT entries
EcoWeb / EcoGene - Very comprehensive E.coli db
ECCE - E.coli Cell Envelope Protein Data Collection
ECDC - E.coli db collection
EcoCyc - Encyclopedia of E.coli genes and metabolism
Bacteria
GenProtEC - E.coli genome and proteome db
Colibri - E.coli genome db from Pasteur Insitute
ECGC - E.coli Genome Center at Wisconsin University
DDBJ E.coli - E.coli home page at DDBJ 　
B.subtilis SWISS-PROT list - Links to B.subtilis WWW sites and to SWISS-PROT entries
SubtiList - Bacillus subtilis genomic db
NRSub - Bacillus subtilis non-redundant db [Mirror in Japan]
Bacteria
Micado - Microbial advanced db (B.subtilis + E.coli) (previously known as MadBase)
BSORF - Japanese server on B.subtilis 　
A.actinomycetemcomitans - Actinobacillus actinomycetemcomitans strain HK1651 genome project
B.stearothermophilus - Bacillus stearothermophilus strain 10 genome project
B.pertussis - Bordetella pertussis genome WWW site
BbDB - TIGR Borrelia burgdorferi genome db
Bacteria
iBGD - Integrated Buchnera genome db
B.cepacia - Burkholderia cepacia genome project
Chlamydia - Chlamydia pneumoniae and trachomatis
C.muridarum - TIGR Chlamydia muridarum strain MoPn genome db
C.pneumoniae AR39 - TIGR Chlamydia pneumoniae strain AR39 genome db
C.pneumoniae J138 - Japanese Chlamydia pneumoniae strain J138 genome db
Bacteria
C.acetobutylicum - GTC Clostridium acetobutylicum strain ATCC 824 data
C.jejuni - Campylobacter jejuni strain NCTC 11168 genome WWW site
C.hutchinsonii - Cytophaga hutchinsonii genome project
DrDB - TIGR Deinococcus radiodurans strain R1 genome db
D.hafniense - Desulfitobacterium hafniense genome project
E.faecium - Enterococcus faecium genome project
Bacteria
F.acidarmanus - Ferroplasma acidarmanus genome project
F.tularensis - Francisella tularensis genome WWW site
H.influenzae SWISS-PROT list - Links to H.influenzae WWW sites and to SWISS-PROT entries
HiDB - TIGR H.influenzae genome db
HIDC - H.influenzae db collection
H.pylori SWISS-PROT list - Links to H.pylori WWW sites and to SWISS-PROT entries
Bacteria
HpDB - TIGR Helicobacter pylori strain 26695 genome db
H.pylori J99 - Astra Helicobacter pylori strain J99 genome db
PyloriGene - Helicobacter pylori genmoic db
MC-1 - Magnetococcus MC-1 genome project
M.magnetotacticum - Magnetospirillum magnetotacticum genome project
MycDB - Mycobacterium db
M.leprae at GTC - GTC Mycobacterium leprae data
M.leprae at Sanger - Sanger Centre M.leprae genome project
TubercuList - Mycobacterium tuberculosis strain H37Rv genome db
MtDB - TIGR Mycobacterium tuberculosis strain Oshkosh genome db
M.tuberculosis at GTC - GTC Mycobacterium tuberculosis data
Bacteria
M.tuberculosis at Sanger - Sanger Centre M.tuberculosis H37Rv genome project
M.tuberculosis secreted proteins
M.tuberculosis structural genomics consortium
M.genitalium SWISS-PROT list - Links to M.genitalium SWISS-PROT entries
MgDB - TIGR Mycoplasma genitalium genome db
M.pneumoniae - Mycoplasma pneumoniae genome project
Bacteria
N.meningitidis A - Sanger Centre Neisseria meningitidis serogroup A strain Z2491 genome project
N.meningitidis B - TIGR Neisseria meningitidis serogroup B strain MC58 genome db
N.gonorrhoeae - Neisseria gonorrhoeae strain FA 1090 genome project
N.europaea - Nitrosomonas europaea genome project
N.punctiforme - Nostoc punctiforme genome project
Bacteria
P.marinus - Prochlorococcus marinus genome project
P.aeruginosa project - Pseudomonas aeruginosa genome project
P.aeruginosa db - Pseudomonas aeruginosa genome db
P.fluorescens - Pseudomonas fluorescens genome project
Rhizobium pNGR234a SWISS-PROT list - Links to Rhizobium plasmid pNGR234a SWISS-PROT entries
Rhizobium pNGR234a analysis
RsGDB - Rhodobacter sphaeroides genome db
R.sphaeroides - Rhodobacter sphaeroides genome project
Bacteria
R.palustris - Rhodopseudomonas palustris genome project
R.prowazekii SWISS-PROT list - Links to prowazekii SWISS-PROT entries
R.prowazekii - Rickettsia prowazekii strain Madrid E genome project
S.typhimurium SWISS-PROT list - Links to S.typhimurium SWISS-PROT entries
RhizoBase - Sinorhizobium loti genome project
S.meliloti - Sinorhizobium meliloti genome project
Bacteria
S.aromaticivorans - Sphingomonas aromaticivorans genome project
S.aureus - Staphylococcus aureus strain NCTC 8325 genome project
S.mutans - Streptococcus mutans strain UAB159 genome project
S.pyogenes - Streptococcus pyogenes strain M1 genome project
PCC 6803 SWISS-PROT list - Links to Synechocystis PCC 6803 SWISS-PROT entries
CyanoBase - Synechocystis PCC 6803 db
Bacteria
Synechococcus - Marine synechococcus genome project
T.fusca - Thermomonospora fusca genome project
TmDB - TIGR Thermotoga maritima genome db
TpDB - TIGR Treponema pallidum genome db
T.erythraeum - Trichodesmium erythraeum genome project
U.urealyticum - Ureaplasma urealyticum genome WWW site
VcDB - TIGR Vibrio cholerae genome db
X.citri - Xanthomonas cititi genome WWW site
Bacteria
X.fastidiosa - Xylella fastidiosa genome WWW site
X.fastidiosa at DOE - DOE Xylella fastidiosa genome project
Y.pestis - Yersinia pestis genome WWW site
Phytophthora Genome Initiative Database - Oomycete sequences and genetic maps

Archaea
A.pernix - Aeropyrum pernix K1 genome db
AfDB - TIGR Archaeoglobus fulgidus genome db
Halobacterium NRC-1 - Halobacterium strain NRC-1 genome project
M.thermoautotrophicum - Methanobacterium thermoautotrophicum genome db
M.jannaschii SWISS-PROT list - Links to M.jannaschii SWISS-PROT entries
MjDB - TIGR Methanococcus jannaschii genome db
MjFdb - Methanococcus jannaschii functions db
Archaea
M.barkeri - Methanosarcina barkeri genome project
P.abyssi - Pyrococcus abyssi genome project and db
P.horikoshii - Pyrococcus horikoshii OT3 db
SGP - Sulfolobus solfataricus strain P2 genome project
T.acidophilum - Thermoplasma acidophilum genome project
Viruses
All the virology on the WWW - links to virology WWW servers by David M. Sander
ICTVdB - Universal virus taxonomy db
AVIS - Animal Virus Information System
Plants Viruses Online - Information on plant viruses
HIV - HIV and related species db
HPV - Human papillomaviruses db
Influenza sequence db
Picornavirus - Picornavirus home page and access to db
Tobamoviruses